PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma203g00090.1
Common NameZOSMA_203G00090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27076.9 Da    PI: 8.8991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma203g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81.1e-261059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fs tg+ly+++s
  Zosma203g00090.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLMVFSGTGRLYDFAS 59
                      8***********************************************86 PP

2K-box81.61.9e-2778171899
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-31291IPR002100Transcription factor, MADS-box
CDDcd002654.55E-45276No hitNo description
PRINTSPR004041.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2582170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.91186178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIIIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLMVFSG TGRLYDFAST  60
SMKSVIDRYN KAKEDHNNLT NATSEDMFWQ REAACMRQKL QMLRENQRHL MGEELSGLRL  120
KDLQNLENQL EMSLRGIRTK KDQILTNEIQ ELSQKGNLIH QENIELYKEV QVYNQHKGGG  180
SNDRAADKFP QVCPHGLSSR DEMRVPFLHL ELCQPQQQQN YEMAPSDPIL GLQLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21182182Myocyte-specific enhancer factor 2B
1tqe_Q2e-21182182Myocyte-specific enhancer factor 2B
1tqe_R2e-21182182Myocyte-specific enhancer factor 2B
1tqe_S2e-21182182Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254616.11e-104PREDICTED: MADS-box transcription factor 23 isoform X2
SwissprotQ6EP492e-89MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0K9PNT11e-176A0A0K9PNT1_Z
STRINGVIT_18s0001g07900.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-85AGAMOUS-like 21